PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6689_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 188aa    MW: 21358.1 Da    PI: 9.4076
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6689_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.9e-066385123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  Neem_6689_f_3 63 FVCEICNKGFQRDQNLQLHRRGH 85
                   89*******************88 PP

2zf-C2H217.41.3e-05139161123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H++t+
  Neem_6689_f_3 139 WKCDKCSKKYAVQSDWKAHQKTC 161
                    58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-66285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-86285No hitNo description
PROSITE profilePS5015710.9496385IPR007087Zinc finger, C2H2
SMARTSM003550.0176385IPR015880Zinc finger, C2H2-like
PfamPF121712.2E-56385IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355100104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-8134160No hitNo description
SMARTSM0035594139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSNITGDEGS FSSGNTGEEV QQLQEKQQQS LQNHLHGSTS GPSDPNAEVI ALSPTTLMAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTTTEVR KRVYICPEPS CVHHNPARAL  120
GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHQKT CGTREYKCDC GTIFSRLILN  180
SSIEHMHA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444264.11e-123hypothetical protein CICLE_v10023420mg
SwissprotQ9LVQ74e-90IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLV4VW001e-123V4VW00_9R
STRINGGLYMA02G17293.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-78C2H2-like zinc finger protein